Hi, It might be, that the application is ignoring the set OMP_NUM_THREADS (or assumes a max value if unset) and using all cores in a machine. How many cores are installed?
-- Reuti Am 07.05.2020 um 01:04 schrieb Jerome IBt: > Dear all > > I'm facing a strange problem with some parralel programs. > Ive run a job ina queue with 24 hours limit time. The job > > Qacct report this (4 cores): > qname all.q > hostname compute-0-3.local > group estudiante > owner xairarg > project NONE > department defaultdepartment > jobname RespBact > jobnumber 1335842 > taskid 24 > account sge > priority 0 > qsub_time Sat May 2 20:29:57 2020 > start_time Sat May 2 22:19:00 2020 > end_time Sun May 3 19:40:54 2020 > granted_pe thread > slots 4 > failed 0 > exit_status 0 > ru_wallclock 76914s > ru_utime 1128016.632s > ru_stime 2191.568s > ru_maxrss 20.811MB > ru_ixrss 0.000B > ru_ismrss 0.000B > ru_idrss 0.000B > ru_isrss 0.000B > ru_minflt 351497264 > ru_majflt 0 > ru_nswap 0 > ru_inblock 71047120 > ru_oublock 1087912 > ru_msgsnd 0 > ru_msgrcv 0 > ru_nsignals 0 > ru_nvcsw 43908490 > ru_nivcsw 80940156 > cpu 1130208.200s > mem 13575.491TBs > io 2.022GB > iow 0.000s > maxvmem 20.813GB > arid undefined > ar_sub_time undefined > category -pe thread 4 > > > Ths job was running 21h22 approximaly. The roblem is that qacct report a > cpu time of 1130208 seconds, in place of 4*76914 = 307656 . That is, 3 > time more! As it was using 12 cores. > > I remember someone speak about this problem in the list. > > What's wrong with this accounting? > > Regards. > > > -- > -- Jérôme > -Ah évidemment j'en suis pas encore aux toiles de maître, mais enfin > c'est un début > -Oh c'est un début qui promet. Mais tu vois si j'étais chez moi comme tu > le disais si gentiment,bah j'mettrai ça ailleurs. > -Qu'est-ce que je disais, y s'rait mieux près de la fenêtre. Tu le > verrais où toi ? > -À la cave. > (Michel Audiard) > _______________________________________________ > users mailing list > users@gridengine.org > https://gridengine.org/mailman/listinfo/users _______________________________________________ users mailing list users@gridengine.org https://gridengine.org/mailman/listinfo/users
