Hi guys,
I just brought up a new SGE cluster, but somehow the qrsh session does not
work:
tester@login-gpu:~$ qrsh
^Cerror: error while waiting for builtin IJS connection: "got select
timeout"
after I hit entered, the session just stuck there forever instead of bring
me to a compute node. I have to entered Crtl+c to terminate and it gave the
above error.
I noticed, the SGE did send my qrsh request to a compute node as I could
tell from qstat:
---------------------------------------------------------------------------------
short.q@zeta-4-15.local BIP 0/1/80 0.01 lx-amd64
15 0.55500 QRLOGIN tester r 01/09/2019 10:47:13 1
We have a prolog script configured globally, the script deals with local
disk quota and keep all output to a log file for each job. So I went to
that compute node, and check, found that a log file was created but it was
empty.
So my thinking so far is, my qrsh stuck because the prolog script is not
fully executed.
qsub job are working fine.
Any idea will be appreciated
Cheers,
Derrick
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