I've got a strange problem on our cluster where some python programs are segfaulting when run through qsub, but work fine on the command line, or even if run remotely through SSH.
Really simple (hello world) programs work OK, but anything which does a significant amount of imports seems to fail. So for example; htseq-count works locally, but qsub -o test.log -cwd -V -j y -b y htseq-count Produces a segfault in the executed program. ssh compute-0-0 htseq-count ..works fine (we're using ssh to launch jobs on our cluster) Any suggestions for how to go about trying to track this down? Thanks Simon. The Babraham Institute, Babraham Research Campus, Cambridge CB22 3AT Registered Charity No. 1053902. The information transmitted in this email is directed only to the addressee. If you received this in error, please contact the sender and delete this email from your system. The contents of this e-mail are the views of the sender and do not necessarily represent the views of the Babraham Institute. Full conditions at: www.babraham.ac.uk<http://www.babraham.ac.uk/terms>
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