Hi Yifan, This is a known issue, please refer to https://issues.apache.org/jira/browse/SPARK-6235 for more details. In your case, it looks like you are caching to disk a partition > 2G. A workaround would be to increase the number of your RDD partitions in order to make them smaller in size.
HTH, Deng On Thu, Oct 29, 2015 at 8:40 PM, Yifan LI <iamyifa...@gmail.com> wrote: > I have a guess that before scanning that RDD, I sorted it and set > partitioning, so the result is not balanced: > > sortBy[S](f: Function > <http://spark.apache.org/docs/latest/api/scala/org/apache/spark/api/java/function/Function.html> > [T, S], ascending: Boolean, *numPartitions*: Int) > > I will try to repartition it to see if it helps. > > Best, > Yifan LI > > > > > > On 29 Oct 2015, at 12:52, Yifan LI <iamyifa...@gmail.com> wrote: > > Hey, > > I was just trying to scan a large RDD sortedRdd, ~1billion elements, using > toLocalIterator api, but an exception returned as it was almost finished: > > java.lang.RuntimeException: java.lang.IllegalArgumentException: Size > exceeds Integer.MAX_VALUE > at sun.nio.ch.FileChannelImpl.map(FileChannelImpl.java:821) > at > org.apache.spark.storage.DiskStore$$anonfun$getBytes$2.apply(DiskStore.scala:125) > at > org.apache.spark.storage.DiskStore$$anonfun$getBytes$2.apply(DiskStore.scala:113) > at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1285) > at org.apache.spark.storage.DiskStore.getBytes(DiskStore.scala:127) > at org.apache.spark.storage.DiskStore.getBytes(DiskStore.scala:134) > at org.apache.spark.storage.BlockManager.doGetLocal(BlockManager.scala:511) > at > org.apache.spark.storage.BlockManager.getBlockData(BlockManager.scala:302) > at > org.apache.spark.network.netty.NettyBlockRpcServer$$anonfun$2.apply(NettyBlockRpcServer.scala:57) > at > org.apache.spark.network.netty.NettyBlockRpcServer$$anonfun$2.apply(NettyBlockRpcServer.scala:57) > at > scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244) > at > scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244) > at > scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) > at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) > at scala.collection.TraversableLike$class.map(TraversableLike.scala:244) > at scala.collection.mutable.ArrayOps$ofRef.map(ArrayOps.scala:108) > at > org.apache.spark.network.netty.NettyBlockRpcServer.receive(NettyBlockRpcServer.scala:57) > at > org.apache.spark.network.server.TransportRequestHandler.processRpcRequest(TransportRequestHandler.java:114) > at > org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:87) > at > org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:101) > at > org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:51) > at > io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105) > at > io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333) > at > io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319) > at > io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:254) > at > io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333) > at > io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319) > at > io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:103) > at > io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333) > at > io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319) > at > io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:163) > at > io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333) > at > io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319) > at > io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:787) > at > io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:130) > at > io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:511) > at > io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468) > at > io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382) > at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354) > at > io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:116) > at java.lang.Thread.run(Thread.java:745) > > at > org.apache.spark.network.client.TransportResponseHandler.handle(TransportResponseHandler.java:162) > at > org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:103) > at > org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:51) > at > io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105) > at > io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333) > at > io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319) > at > io.netty.handler.timeout.IdleStateHandler.channelRead(IdleStateHandler.java:254) > at > io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333) > at > io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319) > at > io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:103) > at > io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333) > at > io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319) > at > io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:163) > at > io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:333) > at > io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:319) > at > io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:787) > at > io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:130) > at > io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:511) > at > io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468) > at > io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382) > at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354) > at > io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:116) > at java.lang.Thread.run(Thread.java:745) > > Driver stacktrace: > at org.apache.spark.scheduler.DAGScheduler.org > $apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1273) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1264) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1263) > at > scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) > at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47) > at > org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1263) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:730) > at > org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:730) > at scala.Option.foreach(Option.scala:236) > at > org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:730) > at > org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1457) > at > org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1418) > at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48) > > Do you have any idea? > > I have set partitioning quite big, like 40000 > > > Best, > Yifan LI > > >
