from pyspark.sql.types import *
import pyspark.sql.functions as F
import re
re_expr = re.compile('P([0-9]+)')
expr_split = F.udf(lambda x: list(map(int, re_expr.findall(x))),
ArrayType(IntegerType()))
c = sc.parallelize([(i, 'P1&P2&P3&P4&P5') for i in range(10 ** 6)],
1).toDF(['a', 'b'])
#sqlContext.sql('drop table ccc')
sqlContext.sql('create table ccc(a int, b string)')
c.insertInto('ccc', True)
c = sqlContext.sql('select * from ccc')
c = c.filter(c.a % 100 == 85)
c = c.select(c.a, F.explode(expr_split(c.b)).alias('d'))
c = c.filter(c.a == 85)
c.take(5)
I use Spark 1.5 (1.4.1 has this error too) and Hive 1.1 from CDH 5.4.2 as
the warehouse. This code yields "org.apache.spark.SparkException: Can only
zip RDDs with same number of elements in each partition", but tweaking
numbers can result in unexpected EOF, wrong data returned or no error.
If I add "stored as parquet" into the create table statement, the code works
ok.
15/09/18 17:30:33 INFO scheduler.DAGScheduler: Job 10 failed: take at
<stdin>:1, took 1.622074 s
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/burdanov/spark/python/pyspark/sql/dataframe.py", line 303, in
take
return self.limit(num).collect()
File "/home/burdanov/spark/python/pyspark/sql/dataframe.py", line 279, in
collect
port =
self._sc._jvm.PythonRDD.collectAndServe(self._jdf.javaToPython().rdd())
File
"/home/burdanov/spark/python/lib/py4j-0.8.2.1-src.zip/py4j/java_gateway.py",
line 538, in __call__
File "/home/burdanov/spark/python/pyspark/sql/utils.py", line 36, in deco
return f(*a, **kw)
File
"/home/burdanov/spark/python/lib/py4j-0.8.2.1-src.zip/py4j/protocol.py",
line 300, in get_return_value
py4j.protocol.Py4JJavaError: An error occurred while calling
z:org.apache.spark.api.python.PythonRDD.collectAndServe.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0
in stage 12.0 failed 1 times, most recent failure: Lost task 0.0 in stage
12.0 (TID 73, localhost): org.apache.spark.SparkException: Can only zip RDDs
with same number of elements in each partition
at
org.apache.spark.rdd.RDD$$anonfun$zip$1$$anonfun$apply$27$$anon$1.hasNext(RDD.scala:832)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$14.hasNext(Iterator.scala:388)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371)
at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:350)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:308)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at
org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.insertAll(BypassMergeSortShuffleWriter.java:99)
at
org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:73)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:88)
at
org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
Driver stacktrace:
at
org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1280)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1268)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1267)
at
scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at
scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at
org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1267)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:697)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:697)
at scala.Option.foreach(Option.scala:236)
at
org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:697)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1493)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1455)
at
org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1444)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at
org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:567)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1813)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1826)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1839)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1910)
at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:905)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:147)
at
org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:108)
at org.apache.spark.rdd.RDD.withScope(RDD.scala:306)
at org.apache.spark.rdd.RDD.collect(RDD.scala:904)
at
org.apache.spark.api.python.PythonRDD$.collectAndServe(PythonRDD.scala:373)
at
org.apache.spark.api.python.PythonRDD.collectAndServe(PythonRDD.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:231)
at
py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:379)
at py4j.Gateway.invoke(Gateway.java:259)
at
py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:133)
at py4j.commands.CallCommand.execute(CallCommand.java:79)
at py4j.GatewayConnection.run(GatewayConnection.java:207)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.spark.SparkException: Can only zip RDDs with same
number of elements in each partition
at
org.apache.spark.rdd.RDD$$anonfun$zip$1$$anonfun$apply$27$$anon$1.hasNext(RDD.scala:832)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$14.hasNext(Iterator.scala:388)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371)
at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:350)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:308)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
at
org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.insertAll(BypassMergeSortShuffleWriter.java:99)
at
org.apache.spark.shuffle.sort.SortShuffleWriter.write(SortShuffleWriter.scala:73)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:73)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:41)
at org.apache.spark.scheduler.Task.run(Task.scala:88)
at
org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
... 1 more
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