Hi,
I'm running Spark on Amazon EMR (Spark 1.4.1, Hadoop 2.6.0). I'm seeing the
exception below when encountering file names that contain colons. Any idea
on how to get around this?
scala> val files = sc.textFile("s3a://redactedbucketname/*")
2015-08-18 04:38:34,567 INFO [main] storage.MemoryStore
(Logging.scala:logInfo(59)) - ensureFreeSpace(242224) called with
curMem=669367, maxMem=285203496
2015-08-18 04:38:34,568 INFO [main] storage.MemoryStore
(Logging.scala:logInfo(59)) - Block broadcast_3 stored as values in memory
(estimated size 236.5 KB, free 271.1 MB)
2015-08-18 04:38:34,663 INFO [main] storage.MemoryStore
(Logging.scala:logInfo(59)) - ensureFreeSpace(21533) called with
curMem=911591, maxMem=285203496
2015-08-18 04:38:34,664 INFO [main] storage.MemoryStore
(Logging.scala:logInfo(59)) - Block broadcast_3_piece0 stored as bytes in
memory (estimated size 21.0 KB, free 271.1 MB)
2015-08-18 04:38:34,665 INFO [sparkDriver-akka.actor.default-dispatcher-19]
storage.BlockManagerInfo (Logging.scala:logInfo(59)) - Added
broadcast_3_piece0 in memory on 10.182.184.26:60338 (size: 21.0 KB, free:
271.9 MB)
2015-08-18 04:38:34,667 INFO [main] spark.SparkContext
(Logging.scala:logInfo(59)) - Created broadcast 3 from textFile at
<console>:21
files: org.apache.spark.rdd.RDD[String] = MapPartitionsRDD[7] at textFile at
<console>:21
scala> files.count
2015-08-18 04:38:37,262 INFO [main] s3a.S3AFileSystem
(S3AFileSystem.java:listStatus(533)) - List status for path:
s3a://redactedbucketname/
2015-08-18 04:38:37,262 INFO [main] s3a.S3AFileSystem
(S3AFileSystem.java:getFileStatus(684)) - Getting path status for
s3a://redactedbucketname/ ()
java.lang.IllegalArgumentException: java.net.URISyntaxException: Relative
path in absolute URI:
[922-212-4438]-[119]-[1]-[2015-08-13T15:43:12.346193%5D-%5B2015-01-01T00:00:00%5D-redacted.csv
at org.apache.hadoop.fs.Path.initialize(Path.java:206)
at org.apache.hadoop.fs.Path.<init>(Path.java:172)
at org.apache.hadoop.fs.Path.<init>(Path.java:94)
at org.apache.hadoop.fs.Globber.glob(Globber.java:240)
at org.apache.hadoop.fs.FileSystem.globStatus(FileSystem.java:1700)
at
org.apache.hadoop.mapred.FileInputFormat.singleThreadedListStatus(FileInputFormat.java:229)
at
org.apache.hadoop.mapred.FileInputFormat.listStatus(FileInputFormat.java:200)
at
org.apache.hadoop.mapred.FileInputFormat.getSplits(FileInputFormat.java:279)
at org.apache.spark.rdd.HadoopRDD.getPartitions(HadoopRDD.scala:207)
at org.apache.spark.rdd.RDD$anonfun$partitions$2.apply(RDD.scala:219)
at org.apache.spark.rdd.RDD$anonfun$partitions$2.apply(RDD.scala:217)
at scala.Option.getOrElse(Option.scala:120)
at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
at
org.apache.spark.rdd.MapPartitionsRDD.getPartitions(MapPartitionsRDD.scala:32)
at org.apache.spark.rdd.RDD$anonfun$partitions$2.apply(RDD.scala:219)
at org.apache.spark.rdd.RDD$anonfun$partitions$2.apply(RDD.scala:217)
at scala.Option.getOrElse(Option.scala:120)
at org.apache.spark.rdd.RDD.partitions(RDD.scala:217)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:1781)
at org.apache.spark.rdd.RDD.count(RDD.scala:1099)
at $iwC$iwC$iwC$iwC$iwC$iwC$iwC$iwC.<init>(<console>:24)
at $iwC$iwC$iwC$iwC$iwC$iwC$iwC.<init>(<console>:29)
at $iwC$iwC$iwC$iwC$iwC$iwC.<init>(<console>:31)
at $iwC$iwC$iwC$iwC$iwC.<init>(<console>:33)
at $iwC$iwC$iwC$iwC.<init>(<console>:35)
at $iwC$iwC$iwC.<init>(<console>:37)
at $iwC$iwC.<init>(<console>:39)
at $iwC.<init>(<console>:41)
at <init>(<console>:43)
at .<init>(<console>:47)
at .<clinit>(<console>)
at .<init>(<console>:7)
at .<clinit>(<console>)
at $print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at
org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065)
at
org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1338)
at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819)
at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:857)
at
org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:902)
at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:814)
at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:657)
at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:665)
at
org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$loop(SparkILoop.scala:670)
at
org.apache.spark.repl.SparkILoop$anonfun$org$apache$spark$repl$SparkILoop$process$1.apply$mcZ$sp(SparkILoop.scala:997)
at
org.apache.spark.repl.SparkILoop$anonfun$org$apache$spark$repl$SparkILoop$process$1.apply(SparkILoop.scala:945)
at
org.apache.spark.repl.SparkILoop$anonfun$org$apache$spark$repl$SparkILoop$process$1.apply(SparkILoop.scala:945)
at
scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
at
org.apache.spark.repl.SparkILoop.org$apache$spark$repl$SparkILoop$process(SparkILoop.scala:945)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1059)
at org.apache.spark.repl.Main$.main(Main.scala:31)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at
org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$runMain(SparkSubmit.scala:665)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:170)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:193)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:112)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.net.URISyntaxException: Relative path in absolute URI:
[922-212-4438]-[119]-[1]-[2015-08-13T15:43:12.346193%5D-%5B2015-01-01T00:00:00%5D-redacted.csv
at java.net.URI.checkPath(URI.java:1804)
at java.net.URI.<init>(URI.java:752)
at org.apache.hadoop.fs.Path.initialize(Path.java:203)
... 65 more
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