I am running it in yarn-client mode and I believe hbase-client is part of the
spark-examples-1.2.0-cdh5.3.0-hadoop2.5.0-cdh5.3.0.jar which I am submitting at
launch.
adding another jstack taken during the hanging - http://pastebin.com/QDQrBw70 -
this is of the CoarseGrainedExecutorBackend process - this one is referencing
hbase and zookeeper.
thanks,Antony.
On Thursday, 25 December 2014, 1:38, Ted Yu <yuzhih...@gmail.com> wrote:
bq. "hbase.zookeeper.quorum": "localhost"
You are running hbase cluster in standalone mode ?Is hbase-client jar in the
classpath ?
Cheers
On Wed, Dec 24, 2014 at 4:11 PM, Antony Mayi <antonym...@yahoo.com> wrote:
I just run it by hand from pyspark shell. here is the steps:
pyspark --jars
/usr/lib/spark/lib/spark-examples-1.2.0-cdh5.3.0-hadoop2.5.0-cdh5.3.0.jar
>>> conf = {"hbase.zookeeper.quorum": "localhost",
... "hbase.mapred.outputtable": "test",...
"mapreduce.outputformat.class":
"org.apache.hadoop.hbase.mapreduce.TableOutputFormat",...
"mapreduce.job.output.key.class":
"org.apache.hadoop.hbase.io.ImmutableBytesWritable",...
"mapreduce.job.output.value.class": "org.apache.hadoop.io.Writable"}>>> keyConv
=
"org.apache.spark.examples.pythonconverters.StringToImmutableBytesWritableConverter">>>
valueConv =
"org.apache.spark.examples.pythonconverters.StringListToPutConverter">>>
sc.parallelize([['testkey', 'f1', 'testqual', 'testval']], 1).map(lambda x:
(x[0], x)).saveAsNewAPIHadoopDataset(... conf=conf,...
keyConverter=keyConv,... valueConverter=valueConv)
then it spills few of the INFO level messages about submitting a task etc but
then it just hangs. very same code runs ok on spark 1.1.0 - the records gets
stored in hbase.
thanks,Antony.
On Thursday, 25 December 2014, 0:37, Ted Yu <yuzhih...@gmail.com> wrote:
I went over the jstack but didn't find any call related to hbase or
zookeeper.Do you find anything important in the logs ?
Looks like container launcher was waiting for the script to return some result:
- at
org.apache.hadoop.util.Shell$ShellCommandExecutor.parseExecResult(Shell.java:715)
- at org.apache.hadoop.util.Shell.runCommand(Shell.java:524)
On Wed, Dec 24, 2014 at 3:11 PM, Antony Mayi <antonym...@yahoo.com> wrote:
this is it (jstack of particular yarn container) -> http://pastebin.com/eAdiUYKK
thanks, Antony.
On Wednesday, 24 December 2014, 16:34, Ted Yu <yuzhih...@gmail.com> wrote:
bq. even when testing with the example from the stock hbase_outputformat.py
Can you take jstack of the above and pastebin it ?
Thanks
On Wed, Dec 24, 2014 at 4:49 AM, Antony Mayi <antonym...@yahoo.com.invalid>
wrote:
Hi,
have been using this without any issues with spark 1.1.0 but after upgrading to
1.2.0 saving a RDD from pyspark using saveAsNewAPIHadoopDataset into HBase just
hangs - even when testing with the example from the stock hbase_outputformat.py.
anyone having same issue? (and able to solve?)
using hbase 0.98.6 and yarn-client mode.
thanks,Antony.
