Hi Everyone,
I have absolutely no experience with Pig and limited experience with hadoop, so
please bear with me. We built a small hadoop cluster for experimental purposes
and installed pig with all listed dependencies. I made sure that all of the
jars are in CLASSPATH and env variables are defined as docuemtned, but still
getting the following error:
2013-04-22 16:50:08,770 [main] ERROR org.apache.pig.tools.grunt.Grunt - ERROR
1070: Could not resolve BamUDFLoader using imports: [, org.apache.pig.builtin.,
org.apache.pig.impl.builtin.]
And this is the command we are running:
pig -param inputfile=./bowtie_sorted.bam -param outputfile=hadoop_bam.pileup
-param pparallel=1 ${SEQPIG_HOME}/scripts/pileup.pig
My google search for this error or "BamUDFLoader" alone did not return anything
useful. Which jar is supposed to provide this function? Any suggestions will be
appreciated.
Thanks a lot in advance!
-Mehmet
