Hi folks,

I recently upgraded to Flink 1.12.0 and I’m hitting an issue where my JM is 
crashing while cancelling a job. This is causing Kubernetes readiness probes to 
fail, the JM to be restarted, and then get in a bad state while it tries to 
recover itself using ZK + a checkpoint which no longer exists.

This is the only information being logged before the process exits:


 method: uncaughtException
   msg: FATAL: Thread 'cluster-io-thread-4' produced an uncaught exception. 
Stopping the process...
   pod: dev-dsp-flink-canary-test-9fa6d3e7-jm-59884f579-w8r6x
   stack: java.util.concurrent.RejectedExecutionException: Task 
java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask@41554407 
rejected from 
java.util.concurrent.ScheduledThreadPoolExecutor@5d0ec6f7[Terminated, pool size 
= 0, active threads = 0, queued tasks = 0, completed tasks = 25977] at 
java.util.concurrent.ThreadPoolExecutor$AbortPolicy.rejectedExecution(ThreadPoolExecutor.java:2063)
 at java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:830) 
at 
java.util.concurrent.ScheduledThreadPoolExecutor.delayedExecute(ScheduledThreadPoolExecutor.java:326)
 at 
java.util.concurrent.ScheduledThreadPoolExecutor.schedule(ScheduledThreadPoolExecutor.java:533)
 at 
java.util.concurrent.ScheduledThreadPoolExecutor.execute(ScheduledThreadPoolExecutor.java:622)
 at 
java.util.concurrent.Executors$DelegatedExecutorService.execute(Executors.java:668)
 at 
org.apache.flink.runtime.concurrent.ScheduledExecutorServiceAdapter.execute(ScheduledExecutorServiceAdapter.java:62)
 at 
org.apache.flink.runtime.checkpoint.CheckpointCoordinator.scheduleTriggerRequest(CheckpointCoordinator.java:1152)
 at 
org.apache.flink.runtime.checkpoint.CheckpointsCleaner.lambda$cleanCheckpoint$0(CheckpointsCleaner.java:58)
 at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) 
at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) 
at java.lang.Thread.run(Thread.java:748)


https://github.com/apache/flink/blob/release-1.12.0/flink-runtime/src/main/java/org/apache/flink/runtime/checkpoint/CheckpointsCleaner.java#L58


I’m not sure how to debug this further, but it seems like an internal Flink bug?

More info:


  *   Checkpoints are stored in S3 and I’m using the S3 connector
  *   Identical code has been running on Flink 1.11.x for months with no issues


Thanks,
Kelly

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