Now I'm able to run my job but after a while I get this other exception:
09:43:49,383 INFO org.apache.flink.runtime.taskmanager.TaskManager
- Unregistering task and sending final execution state FINISHED to
JobManager for task CHAIN DataSource (at
createInput(ExecutionEnvironment.java:490)
(org.apache.flink.api.java.hadoop.mapreduce.HadoopInputFormat)) -> FlatMap
(FlatMap at readTuplesFromThriftParquet(MyParquetThriftClass.java:94))
(a216cedd838190aebf3849fffe7fe576)
09:45:50,205 INFO org.apache.flink.runtime.taskmanager.TaskManager
- Discarding the results produced by task execution
c088f1c46c6e823cd9cc90f0e679696c
ERROR org.apache.flink.runtime.io.network.partition.ResultPartition -
Error during release of result subpartition: Closing of asynchronous file
channel was interrupted.
java.io.IOException: Closing of asynchronous file channel was interrupted.
at
org.apache.flink.runtime.io.disk.iomanager.AsynchronousFileIOChannel.close(AsynchronousFileIOChannel.java:130)
at
org.apache.flink.runtime.io.disk.iomanager.AsynchronousFileIOChannel.closeAndDelete(AsynchronousFileIOChannel.java:158)
at
org.apache.flink.runtime.io.network.partition.SpillableSubpartition.release(SpillableSubpartition.java:130)
at
org.apache.flink.runtime.io.network.partition.ResultPartition.release(ResultPartition.java:288)
at
org.apache.flink.runtime.io.network.partition.ResultPartitionManager.releasePartitionsProducedBy(ResultPartitionManager.java:91)
at
org.apache.flink.runtime.io.network.NetworkEnvironment.unregisterTask(NetworkEnvironment.java:329)
at org.apache.flink.runtime.taskmanager.Task.run(Task.java:648)
at java.lang.Thread.run(Thread.java:745)
Any ideas?
On Wed, May 20, 2015 at 9:11 PM, Flavio Pompermaier <pomperma...@okkam.it>
wrote:
> Thank you Stephan!I'll let you know tomorrow!
> On May 20, 2015 7:30 PM, "Stephan Ewen" <se...@apache.org> wrote:
>
>> Hi!
>>
>> I pushed a fix to the master that should solve this.
>>
>> It probably needs a bit until the snapshot repositories are synced.
>>
>> Let me know if it fixed your issue!
>>
>> Greetings,
>> Stephan
>>
>>
>> On Wed, May 20, 2015 at 1:48 PM, Flavio Pompermaier <pomperma...@okkam.it
>> > wrote:
>>
>>> Here it is:
>>>
>>> java.lang.RuntimeException: Requesting the next InputSplit failed.
>>> at
>>> org.apache.flink.runtime.taskmanager.TaskInputSplitProvider.getNextInputSplit(TaskInputSplitProvider.java:89)
>>> at
>>> org.apache.flink.runtime.operators.DataSourceTask$1.hasNext(DataSourceTask.java:340)
>>> at
>>> org.apache.flink.runtime.operators.DataSourceTask.invoke(DataSourceTask.java:139)
>>> at org.apache.flink.runtime.taskmanager.Task.run(Task.java:562)
>>> at java.lang.Thread.run(Thread.java:745)
>>> Caused by: java.lang.RuntimeException: Unable to create InputSplit
>>> at
>>> org.apache.flink.api.java.hadoop.mapreduce.wrapper.HadoopInputSplit.readObject(HadoopInputSplit.java:108)
>>> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>> at
>>> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
>>> at
>>> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>>> at java.lang.reflect.Method.invoke(Method.java:606)
>>> at
>>> java.io.ObjectStreamClass.invokeReadObject(ObjectStreamClass.java:1017)
>>> at java.io.ObjectInputStream.readSerialData(ObjectInputStream.java:1893)
>>> at
>>> java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1798)
>>> at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1350)
>>> at java.io.ObjectInputStream.readObject(ObjectInputStream.java:370)
>>> at
>>> org.apache.flink.util.InstantiationUtil.deserializeObject(InstantiationUtil.java:302)
>>> at
>>> org.apache.flink.runtime.taskmanager.TaskInputSplitProvider.getNextInputSplit(TaskInputSplitProvider.java:83)
>>> ... 4 more
>>> Caused by: java.lang.ClassNotFoundException:
>>> parquet.hadoop.ParquetInputSplit
>>> at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
>>> at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
>>> at java.security.AccessController.doPrivileged(Native Method)
>>> at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
>>> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
>>> at java.lang.Class.forName0(Native Method)
>>> at java.lang.Class.forName(Class.java:190)
>>> at
>>> org.apache.flink.api.java.hadoop.mapreduce.wrapper.HadoopInputSplit.readObject(HadoopInputSplit.java:104)
>>> ... 15 more
>>>
>>>
>>> On Wed, May 20, 2015 at 1:45 PM, Stephan Ewen <se...@apache.org> wrote:
>>>
>>>> This is a bug in the HadoopInputSplit. It does not follow the general
>>>> class loading rules in Flink. I think it is pretty straightforward to fix,
>>>> I'll give it a quick shot...
>>>>
>>>> Can you send me the entire stack trace (where the serialization call
>>>> comes from) to verify this?
>>>>
>>>> On Wed, May 20, 2015 at 12:03 PM, Flavio Pompermaier <
>>>> pomperma...@okkam.it> wrote:
>>>>
>>>>> Now I'm able to run the job but I get another exception..this time it
>>>>> seems that Flink it's not able to split my Parquet file:
>>>>>
>>>>> Caused by: java.lang.ClassNotFoundException:
>>>>> parquet.hadoop.ParquetInputSplit
>>>>> at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
>>>>> at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
>>>>> at java.security.AccessController.doPrivileged(Native Method)
>>>>> at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
>>>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
>>>>> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
>>>>> at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
>>>>> at java.lang.Class.forName0(Native Method)
>>>>> at java.lang.Class.forName(Class.java:190)
>>>>> at
>>>>> org.apache.flink.api.java.hadoop.mapreduce.wrapper.HadoopInputSplit.readObject(HadoopInputSplit.java:104)
>>>>>
>>>>> I checked the jar and that class is present in my "fat" jar.
>>>>> What should I do now?
>>>>>
>>>>>
>>>>> On Wed, May 20, 2015 at 10:57 AM, Flavio Pompermaier <
>>>>> pomperma...@okkam.it> wrote:
>>>>>
>>>>>> Yes it could be that the jar classes and those on the cluster are not
>>>>>> aligned for some days..Now I'll recompile both sides and if I still have
>>>>>> the error I will change line 42 as you suggested.
>>>>>> Tanks Max
>>>>>>
>>>>>> On Wed, May 20, 2015 at 10:53 AM, Maximilian Michels <m...@apache.org>
>>>>>> wrote:
>>>>>>
>>>>>>> Hi Flavio,
>>>>>>>
>>>>>>> It would be helpful, if we knew which class could not be found. In
>>>>>>> the ClosureCleaner, can you change line 42 to include the class name in
>>>>>>> the
>>>>>>> error message? Like in this example:
>>>>>>>
>>>>>>> private static ClassReader getClassReader(Class<?> cls) {
>>>>>>> String className = cls.getName().replaceFirst("^.*\\.", "") +
>>>>>>> ".class";
>>>>>>> try {
>>>>>>> return new ClassReader(cls.getResourceAsStream(className));
>>>>>>> } catch (IOException e) {
>>>>>>> throw new RuntimeException("Could not create ClassReader for
>>>>>>> class " + cls.getName() + ":" + e);
>>>>>>> }
>>>>>>> }
>>>>>>>
>>>>>>> Could it be that you're running an old job on the latest snapshot
>>>>>>> version? This could cause class-related problems...
>>>>>>>
>>>>>>> Cheers,
>>>>>>> Max
>>>>>>>
>>>>>>> On Wed, May 20, 2015 at 9:41 AM, Flavio Pompermaier <
>>>>>>> pomperma...@okkam.it> wrote:
>>>>>>>
>>>>>>>> Any insight about this..?
>>>>>>>>
>>>>>>>> On Tue, May 19, 2015 at 12:49 PM, Flavio Pompermaier <
>>>>>>>> pomperma...@okkam.it> wrote:
>>>>>>>>
>>>>>>>>> Hi to all,
>>>>>>>>>
>>>>>>>>> I tried to run my job on a brand new Flink cluster (0.9-SNAPSHOT)
>>>>>>>>> from the web client UI using the shading strategy of the quickstart
>>>>>>>>> example
>>>>>>>>> but I get this exception:
>>>>>>>>>
>>>>>>>>> Caused by: java.lang.RuntimeException: Could not create
>>>>>>>>> ClassReader: java.io.IOException: Class not found
>>>>>>>>> at
>>>>>>>>> org.apache.flink.api.java.ClosureCleaner.getClassReader(ClosureCleaner.java:42)
>>>>>>>>> at
>>>>>>>>> org.apache.flink.api.java.ClosureCleaner.cleanThis0(ClosureCleaner.java:67)
>>>>>>>>> at
>>>>>>>>> org.apache.flink.api.java.ClosureCleaner.clean(ClosureCleaner.java:54)
>>>>>>>>>
>>>>>>>>> It seems that it cannot find some kryo class..how do I fix this?
>>>>>>>>> this is my shade plugin section of pom.xml:
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> <plugin>
>>>>>>>>> <groupId>org.apache.maven.plugins</groupId>
>>>>>>>>> <artifactId>maven-shade-plugin</artifactId>
>>>>>>>>> <version>1.4</version>
>>>>>>>>> <executions>
>>>>>>>>> <execution>
>>>>>>>>> <phase>package</phase>
>>>>>>>>> <goals>
>>>>>>>>> <goal>shade</goal>
>>>>>>>>> </goals>
>>>>>>>>> <configuration>
>>>>>>>>> <artifactSet>
>>>>>>>>> <excludes>
>>>>>>>>> <!-- This list contains all dependencies of flink-dist Everything
>>>>>>>>> else will be packaged into the fat-jar -->
>>>>>>>>> <exclude>org.apache.flink:flink-shaded-*</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-core</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-java</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-scala</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-runtime</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-optimizer</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-clients</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-spargel</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-avro</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-java-examples</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-scala-examples</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-streaming-examples</exclude>
>>>>>>>>> <exclude>org.apache.flink:flink-streaming-core</exclude>
>>>>>>>>>
>>>>>>>>> <!-- Also exclude very big transitive dependencies of Flink
>>>>>>>>> WARNING:
>>>>>>>>> You have to remove these excludes if your code relies on other
>>>>>>>>> versions of
>>>>>>>>> these dependencies. -->
>>>>>>>>> <exclude>org.scala-lang:scala-library</exclude>
>>>>>>>>> <exclude>org.scala-lang:scala-compiler</exclude>
>>>>>>>>> <exclude>org.scala-lang:scala-reflect</exclude>
>>>>>>>>> <exclude>com.amazonaws:aws-java-sdk</exclude>
>>>>>>>>> <exclude>com.typesafe.akka:akka-actor_*</exclude>
>>>>>>>>> <exclude>com.typesafe.akka:akka-remote_*</exclude>
>>>>>>>>> <exclude>com.typesafe.akka:akka-slf4j_*</exclude>
>>>>>>>>> <exclude>io.netty:netty-all</exclude>
>>>>>>>>> <exclude>io.netty:netty</exclude>
>>>>>>>>> <exclude>org.eclipse.jetty:jetty-server</exclude>
>>>>>>>>> <exclude>org.eclipse.jetty:jetty-continuation</exclude>
>>>>>>>>> <exclude>org.eclipse.jetty:jetty-http</exclude>
>>>>>>>>> <exclude>org.eclipse.jetty:jetty-io</exclude>
>>>>>>>>> <exclude>org.eclipse.jetty:jetty-util</exclude>
>>>>>>>>> <exclude>org.eclipse.jetty:jetty-security</exclude>
>>>>>>>>> <exclude>org.eclipse.jetty:jetty-servlet</exclude>
>>>>>>>>> <exclude>commons-fileupload:commons-fileupload</exclude>
>>>>>>>>> <exclude>org.apache.avro:avro</exclude>
>>>>>>>>> <exclude>commons-collections:commons-collections</exclude>
>>>>>>>>> <exclude>org.codehaus.jackson:jackson-core-asl</exclude>
>>>>>>>>> <exclude>org.codehaus.jackson:jackson-mapper-asl</exclude>
>>>>>>>>> <exclude>com.thoughtworks.paranamer:paranamer</exclude>
>>>>>>>>> <exclude>org.xerial.snappy:snappy-java</exclude>
>>>>>>>>> <exclude>org.apache.commons:commons-compress</exclude>
>>>>>>>>> <exclude>org.tukaani:xz</exclude>
>>>>>>>>> <exclude>com.esotericsoftware.kryo:kryo</exclude>
>>>>>>>>> <exclude>com.esotericsoftware.minlog:minlog</exclude>
>>>>>>>>> <exclude>org.objenesis:objenesis</exclude>
>>>>>>>>> <exclude>com.twitter:chill_*</exclude>
>>>>>>>>> <exclude>com.twitter:chill-java</exclude>
>>>>>>>>> <exclude>com.twitter:chill-avro_*</exclude>
>>>>>>>>> <exclude>com.twitter:chill-bijection_*</exclude>
>>>>>>>>> <exclude>com.twitter:bijection-core_*</exclude>
>>>>>>>>> <exclude>com.twitter:bijection-avro_*</exclude>
>>>>>>>>> <exclude>com.twitter:chill-protobuf</exclude>
>>>>>>>>> <exclude>com.google.protobuf:protobuf-java</exclude>
>>>>>>>>> <exclude>com.twitter:chill-thrift</exclude>
>>>>>>>>> <exclude>org.apache.thrift:libthrift</exclude>
>>>>>>>>> <exclude>commons-lang:commons-lang</exclude>
>>>>>>>>> <exclude>junit:junit</exclude>
>>>>>>>>> <exclude>de.javakaffee:kryo-serializers</exclude>
>>>>>>>>> <exclude>joda-time:joda-time</exclude>
>>>>>>>>> <exclude>org.apache.commons:commons-lang3</exclude>
>>>>>>>>> <exclude>org.slf4j:slf4j-api</exclude>
>>>>>>>>> <exclude>org.slf4j:slf4j-log4j12</exclude>
>>>>>>>>> <exclude>log4j:log4j</exclude>
>>>>>>>>> <exclude>org.apache.commons:commons-math</exclude>
>>>>>>>>> <exclude>org.apache.sling:org.apache.sling.commons.json</exclude>
>>>>>>>>> <exclude>commons-logging:commons-logging</exclude>
>>>>>>>>> <exclude>org.apache.httpcomponents:httpclient</exclude>
>>>>>>>>> <exclude>org.apache.httpcomponents:httpcore</exclude>
>>>>>>>>> <exclude>commons-codec:commons-codec</exclude>
>>>>>>>>> <exclude>com.fasterxml.jackson.core:jackson-core</exclude>
>>>>>>>>> <exclude>com.fasterxml.jackson.core:jackson-databind</exclude>
>>>>>>>>> <exclude>com.fasterxml.jackson.core:jackson-annotations</exclude>
>>>>>>>>> <exclude>org.codehaus.jettison:jettison</exclude>
>>>>>>>>> <exclude>stax:stax-api</exclude>
>>>>>>>>> <exclude>com.typesafe:config</exclude>
>>>>>>>>> <exclude>org.uncommons.maths:uncommons-maths</exclude>
>>>>>>>>> <exclude>com.github.scopt:scopt_*</exclude>
>>>>>>>>> <exclude>org.mortbay.jetty:servlet-api</exclude>
>>>>>>>>> <exclude>commons-io:commons-io</exclude>
>>>>>>>>> <exclude>commons-cli:commons-cli</exclude>
>>>>>>>>> </excludes>
>>>>>>>>> </artifactSet>
>>>>>>>>> <filters>
>>>>>>>>> <filter>
>>>>>>>>> <artifact>org.apache.flink:*</artifact>
>>>>>>>>> <excludes>
>>>>>>>>> <exclude>org/apache/flink/shaded/**</exclude>
>>>>>>>>> <exclude>web-docs/**</exclude>
>>>>>>>>> </excludes>
>>>>>>>>> </filter>
>>>>>>>>> </filters>
>>>>>>>>> <createDependencyReducedPom>false</createDependencyReducedPom>
>>>>>>>>> <finalName>XXXX</finalName>
>>>>>>>>> <transformers>
>>>>>>>>> <!-- add Main-Class to manifest file -->
>>>>>>>>> <transformer
>>>>>>>>>
>>>>>>>>> implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
>>>>>>>>> <manifestEntries>
>>>>>>>>> <Main-Class>XXX</Main-Class>
>>>>>>>>> </manifestEntries>
>>>>>>>>> </transformer>
>>>>>>>>> </transformers>
>>>>>>>>> </configuration>
>>>>>>>>> </execution>
>>>>>>>>> </executions>
>>>>>>>>> </plugin>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>
>>>
>>>
>>>
>>
