Let me be more specific - run the async java profiler and generate a
flame graph to determine where CPU time is spent.

On Wed, Apr 17, 2019 at 11:36 AM Jon Haddad <j...@jonhaddad.com> wrote:
>
> Run the async java profiler on the node to determine what it's doing:
> https://github.com/jvm-profiling-tools/async-profiler
>
> On Wed, Apr 17, 2019 at 11:31 AM Carl Mueller
> <carl.muel...@smartthings.com.invalid> wrote:
> >
> > No, we just did the package upgrade 2.1.9 --> 2.2.13
> >
> > It definitely feels like some indexes are being recalculated or the entire 
> > sstables are being scanned due to suspected corruption.
> >
> >
> > On Wed, Apr 17, 2019 at 12:32 PM Jeff Jirsa <jji...@gmail.com> wrote:
> >>
> >> There was a time when changing some of the parameters (especially bloom 
> >> filter FP ratio) would cause the bloom filters to be rebuilt on startup if 
> >> the sstables didnt match what was in the schema, leading to a delay like 
> >> that and similar logs. Any chance you changed the schema on that table 
> >> since the last time you restarted it?
> >>
> >>
> >>
> >> On Wed, Apr 17, 2019 at 10:30 AM Carl Mueller 
> >> <carl.muel...@smartthings.com.invalid> wrote:
> >>>
> >>> Oh, the table in question is SizeTiered, had about 10 sstables total, it 
> >>> was JBOD across two data directories.
> >>>
> >>> On Wed, Apr 17, 2019 at 12:26 PM Carl Mueller 
> >>> <carl.muel...@smartthings.com> wrote:
> >>>>
> >>>> We are doing a ton of upgrades to get out of 2.1.x. We've done probably 
> >>>> 20-30 clusters so far and have not encountered anything like this yet.
> >>>>
> >>>> After upgrade of a node, the restart takes a long time. like 10 minutes 
> >>>> long. ALmost all of our other nodes took less than 2 minutes to upgrade 
> >>>> (aside from sstableupgrades).
> >>>>
> >>>> The startup stalls on a particular table, it is the largest table at 
> >>>> about 300GB, but we have upgraded other clusters with about that much 
> >>>> data without this 8-10 minute delay. We have the ability to roll back 
> >>>> the node, and the restart as a 2.1.x node is normal with no delays.
> >>>>
> >>>> Alas this is a prod cluster so we are going to try to sstable load the 
> >>>> data on a lower environment and try to replicate the delay. If we can, 
> >>>> we will turn on debug logging.
> >>>>
> >>>> This occurred on the first node we tried to upgrade. It is possible it 
> >>>> is limited to only this node, but we are gunshy to play around with 
> >>>> upgrades in prod.
> >>>>
> >>>> We have an automated upgrading program that flushes, snapshots, shuts 
> >>>> down gossip, drains before upgrade, suppressed autostart on upgrade, and 
> >>>> has worked about as flawlessly as one could hope for so far for 2.1->2.2 
> >>>> and 2.2-> 3.11 upgrades.
> >>>>
> >>>> INFO  [main] 2019-04-16 17:22:17,004 ColumnFamilyStore.java:389 - 
> >>>> Initializing zzzz.access_token
> >>>> INFO  [main] 2019-04-16 17:22:17,096 ColumnFamilyStore.java:389 - 
> >>>> Initializing zzzz.refresh_token
> >>>> INFO  [main] 2019-04-16 17:28:52,929 ColumnFamilyStore.java:389 - 
> >>>> Initializing zzzz.userid
> >>>> INFO  [main] 2019-04-16 17:28:52,930 ColumnFamilyStore.java:389 - 
> >>>> Initializing zzzz.access_token_by_auth
> >>>>
> >>>> You can see the 6:30 delay in the startup log above. All the other 
> >>>> keyspace/tables initialize in under a second.
> >>>>
> >>>>

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