I suggest you describe exactly what the problem is you have and why you think stopping compaction/repair is the appropriate solution.

compacting 41.7 GB CF with about 200 millions rows adds - 600 MB to heap, node logs messages like:

WARN [ScheduledTasks:1] 2011-12-27 00:20:57,972 GCInspector.java (line 146) Heap is 0.9712791382159731 full. You may need to reduce memtable and/or cache sizes. Cassandra will now flush up to the two largest memtables to free up memory. Adjust flush_largest_memtables_at threshold in cassandra.yaml if you don't want Cassandra to do this automatically INFO [ScheduledTasks:1] 2011-12-27 00:21:12,362 StorageService.java (line 2608) Unable to reduce heap usage since there are no dirty column families

And its pretty dead, killing compaction will make it alive again.

After node boot
Heap Memory (MB) : 1157.98 / 1985.00

disabled gossip + thrift, only compaction running
Heap Memory (MB) : 1981.00 / 1985.00

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