These types of exceptions is seen sporadically in our cassandra logs. They
occur especially after running a repair with the nodetool.
I assume there are a few "corrupt" rows. Is this cause for panic?
Will a repair fix this, or is it best to do a "decomission + bootstrap" via a
move for example? or would a "scrub" help here?
ERROR [CompactionExecutor:1] 2011-04-07 15:51:12,093 PrecompactedRow.java (line
82) Skipping row DecoratedKey(36813508603227779893025154359070714012,
32326437643439642d623566332d346433392d613334622d343738643433633130383633) in
/var/lib/cassandra/data/DFS/main-f-164-Data.db
java.io.EOFException
at java.io.RandomAccessFile.readFully(RandomAccessFile.java:383)
at java.io.RandomAccessFile.readFully(RandomAccessFile.java:361)
at
org.apache.cassandra.io.util.BufferedRandomAccessFile.readBytes(BufferedRandomAccessFile.java:268)
at
org.apache.cassandra.utils.ByteBufferUtil.read(ByteBufferUtil.java:310)
at
org.apache.cassandra.utils.ByteBufferUtil.readWithLength(ByteBufferUtil.java:267)
at
org.apache.cassandra.db.ColumnSerializer.deserialize(ColumnSerializer.java:76)
at
org.apache.cassandra.db.ColumnSerializer.deserialize(ColumnSerializer.java:35)
at
org.apache.cassandra.db.ColumnFamilySerializer.deserializeColumns(ColumnFamilySerializer.java:129)
at
org.apache.cassandra.io.sstable.SSTableIdentityIterator.getColumnFamilyWithColumns(SSTableIdentityIterator.java:176)
at
org.apache.cassandra.io.PrecompactedRow.<init>(PrecompactedRow.java:78)
at
org.apache.cassandra.io.CompactionIterator.getCompactedRow(CompactionIterator.java:139)
at
org.apache.cassandra.io.CompactionIterator.getReduced(CompactionIterator.java:108)
at
org.apache.cassandra.io.CompactionIterator.getReduced(CompactionIterator.java:43)
at
org.apache.cassandra.utils.ReducingIterator.computeNext(ReducingIterator.java:73)
at
com.google.common.collect.AbstractIterator.tryToComputeNext(AbstractIterator.java:136)
at
com.google.common.collect.AbstractIterator.hasNext(AbstractIterator.java:131)
at
org.apache.commons.collections.iterators.FilterIterator.setNextObject(FilterIterator.java:183)
at
org.apache.commons.collections.iterators.FilterIterator.hasNext(FilterIterator.java:94)
at
org.apache.cassandra.db.CompactionManager.doValidationCompaction(CompactionManager.java:803)
at
org.apache.cassandra.db.CompactionManager.access$800(CompactionManager.java:56)
at
org.apache.cassandra.db.CompactionManager$6.call(CompactionManager.java:358)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
ERROR [CompactionExecutor:1] 2011-04-07 15:51:26,356
INFO [MigrationStage:1] 2011-03-11 17:20:10,900 Migration.java (line 136)
Applying migration 6f6e2a6c-4bfb-11e0-a3ae-87e4c47e8541 Add keyspace: DFSrep
factor:2rep
strategy:NetworkTopologyStrategy{org.apache.cassandra.config.CFMetaData@2a4bd173[cfId=1000,tableName=DFS,cfName=main,cfType=Standard,comparator=org.apache.cassandra.db.marshal.BytesType@c16c2c0,subcolumncomparator=<null>,c...skipping...
at
org.apache.cassandra.db.ColumnFamilySerializer.deserializeColumns(ColumnFamilySerializer.java:129)
at
org.apache.cassandra.io.sstable.SSTableIdentityIterator.getColumnFamilyWithColumns(SSTableIdentityIterator.java:176)
at
org.apache.cassandra.io.PrecompactedRow.<init>(PrecompactedRow.java:78)
at
org.apache.cassandra.io.CompactionIterator.getCompactedRow(CompactionIterator.java:139)
at
org.apache.cassandra.io.CompactionIterator.getReduced(CompactionIterator.java:108)
at
org.apache.cassandra.io.CompactionIterator.getReduced(CompactionIterator.java:43)
at
org.apache.cassandra.utils.ReducingIterator.computeNext(ReducingIterator.java:73)
at
com.google.common.collect.AbstractIterator.tryToComputeNext(AbstractIterator.java:136)
at
com.google.common.collect.AbstractIterator.hasNext(AbstractIterator.java:131)
at
org.apache.commons.collections.iterators.FilterIterator.setNextObject(FilterIterator.java:183)
at
org.apache.commons.collections.iterators.FilterIterator.hasNext(FilterIterator.java:94)
at
org.apache.cassandra.db.CompactionManager.doCompaction(CompactionManager.java:449)
at
org.apache.cassandra.db.CompactionManager$1.call(CompactionManager.java:124)
at
org.apache.cassandra.db.CompactionManager$1.call(CompactionManager.java:94)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
ERROR [CompactionExecutor:1] 2011-04-07 16:01:26,860
AbstractCassandraDaemon.java (line 114) Fatal exception in thread
Thread[CompactionExecutor:1,1,main]
java.io.IOError: java.io.EOFException
at
org.apache.cassandra.io.sstable.SSTableIdentityIterator.<init>(SSTableIdentityIterator.java:117)
at
org.apache.cassandra.io.sstable.SSTableIdentityIterator.<init>(SSTableIdentityIterator.java:67)
at
org.apache.cassandra.io.sstable.SSTableScanner$KeyScanningIterator.next(SSTableScanner.java:179)
at
org.apache.cassandra.io.sstable.SSTableScanner$KeyScanningIterator.next(SSTableScanner.java:144)
at
org.apache.cassandra.io.sstable.SSTableScanner.next(SSTableScanner.java:136)
at
org.apache.cassandra.io.sstable.SSTableScanner.next(SSTableScanner.java:39)
at
org.apache.commons.collections.iterators.CollatingIterator.set(CollatingIterator.java:284)
at
org.apache.commons.collections.iterators.CollatingIterator.least(CollatingIterator.java:326)
at
org.apache.commons.collections.iterators.CollatingIterator.next(CollatingIterator.java:230)
at
org.apache.cassandra.utils.ReducingIterator.computeNext(ReducingIterator.java:68)
at
com.google.common.collect.AbstractIterator.tryToComputeNext(AbstractIterator.java:136)
at
com.google.common.collect.AbstractIterator.hasNext(AbstractIterator.java:131)
at
org.apache.commons.collections.iterators.FilterIterator.setNextObject(FilterIterator.java:183)
at
org.apache.commons.collections.iterators.FilterIterator.hasNext(FilterIterator.java:94)
at
org.apache.cassandra.db.CompactionManager.doCompaction(CompactionManager.java:449)
at
org.apache.cassandra.db.CompactionManager$1.call(CompactionManager.java:124)
at
org.apache.cassandra.db.CompactionManager$1.call(CompactionManager.java:94)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:662)
Caused by: java.io.EOFException
at
org.apache.cassandra.io.sstable.IndexHelper.skipIndex(IndexHelper.java:65)
at
org.apache.cassandra.io.sstable.SSTableIdentityIterator.<init>(SSTableIdentityIterator.java:109)
... 21 more
