See inline 

—
Eila
www.orielesearch.com
https://www.meetup.com/Deep-Learning-In-Production 


Sent from my iPhone

> On Apr 17, 2020, at 11:32 AM, Luke Cwik <lc...@google.com> wrote:
> 
> 
> When you said you checked '/usr/local/', did you check inside the docker 
> container or on the VM itself?
Yes. Checked as part of the DoFn function that runs on the Docker 
> Have you tried adding an echo command before and after your script runs and 
> looked for them in the stackdriver logs?
No. I see the name of the setup.py that I have in the logs
I can add the echo command as well 

> It should help you locate any errors that might have happened when executing 
> the custom commands.
Will try that. Is it correct to target to this folder. Any other folder is 
‘dedicated’ for custom downloads?

Thanks
Eila
> 
>> On Thu, Apr 16, 2020 at 6:30 PM OrielResearch Eila Arich-Landkof 
>> <e...@orielresearch.org> wrote:
>> Hi all,
>> 
>> This is a question that I have post on user-h...@apache.org. in case, the 
>> other one is not a valid address. posting here again. if you have already 
>> received it, apologies for the spam. 
>> 
>> I hope that you are all well. I would like to copy a tools library into the 
>> worker machines and uses the setup.py file. I have update the 
>> CUSTOM_COMMANDS:
>> 
>>  CUSTOM_COMMANDS = [
>>   ["wget", "-O", 
>> "/usr/local/sratoolkit.tar.gz","http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/current/sratoolkit.current-centos_linux64.tar.gz";],
>>   ["tar", "-xzf", "/usr/local/sratoolkit.tar.gz","-C","/usr/local/"]]
>> When I am looking for the execution files at the /user/local folder, I can 
>> not find the tools that I have copied to the worker. What is the right & 
>> easiest way to copy tools libraries into the worker machines? I was able to 
>> get the expected behavior of the local runner and now it's a matter of 
>> finding the right way to reproduce it for the dataflow runner.
>> 
>> I am using python 3.5 with the latest apache-beam 2.20 and latest dataflow 
>> Thanks a lot, eilalan
>> 
>> -- 
>> Eila
>> 
>> Meetup

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