Thanks for the recent update to UMLS::Similarity - I was able to cleanly install it with no errors this time.
I’d like to start up the similarity server on a machine here so that we can
make queries to it. I tried running /usr/local/bin/umls_similarity_server.pl
but it immediately and silently exits. I re-ran it as
/usr/local/bin/umls_similarity_server.pl --logfile umls.log, and umls.log gives
me:
------------------------------------------------------------
In setInterface(MSH, PAR/CHD, path)
FILENAME: /tmp/Ded6K86IZu
CuiFinder User Options:
--config option set
UMLS-Interface Configuration Information
Sources (SAB):
MSH
Relations (REL):
CHD
PAR
Database:
umls (MMSYS-2014AA-20140401)
PathFinder User Options:
--forcerun option set
Setting measures
ICFinder User Options:
--icpropagation /var/www/umls_similarity/icpropagation/icprop.msh.par.chd
Could not open file /var/www/umls_similarity/icpropagation/icprop.msh.par.chd
——————————————————————————————
Seems like I need to create some icpropagation files. How do I do that? I
looked at:
http://search.cpan.org/dist/UMLS-Similarity/utils/create-icpropagation.pl
But I don’t know what I should be providing as the OUTPUTFILE and
ICFREQUENCY_FILE arguments.
While I’m at it, are there other prerequisites to running
umls_similarity_server.pl that I should know about before I try to start it
again?
Thanks,
Steve
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