Hi Ted, In the first case, I set the parameters in the my.ini file in Windows, but it doesn't work . The program doesn't take account the configuration. When I use --socket option with empty value, It throws another error:
C:\>umls-similarity.pl --socket='' --hostname=172.16.5.107:22774 --username=Khad im --password=************ --database=UMLS2012AA --measure lch hand skull Default Settings: --precision 4 User Settings: --username Khadim --password XXXXXXX --database UMLS2012AA --hostname 172.16.5.107:22774 --socket '' --measure lch UMLS-Interface Configuration Information: (Default Information - no config file) Sources (SAB): MSH Relations (REL): PAR CHD Sources (SABDEF): UMLS_ALL Relations (RELDEF): UMLS_ALL ERROR: UMLS::Interface::PathFinder->_checkIndex Index Error (Error Code 9). Index did not complete. Remove using the removeConfigData.pl program and re-run. I will try to use it on ubuntu. Thank you, Le Lundi 3 février 2014 18h32, Drame Khadim <[email protected]> a écrit : Thanks Ted. I will follow your instructions and let you know later. Regards, Khadm Le Lundi 3 février 2014 18h03, Ted Pedersen <[email protected]> a écrit : There was a recent post to this group that gave a few steps in installing on Windows. Perhaps that would be helpful. https://www.mail-archive.com/[email protected]/msg00303.html Also, the following thread is from a Windows user who had exactly the same error. https://www.mail-archive.com/[email protected]/msg00122.html In the first case the user set these parameters in the my.ini file in Windows, and in the second case it involved the installation of the DBI module. But, you might need to provide a different value for --socket - the default is based on Linux and won't work on Windows. I'm not sure if that is the cause of your problem, but it would be something to look at. I would also check and make sure the DBI module was installed correctly, it seems like problems with that not installing can cause this particular error. Let us know how things go. Good luck, Ted On Mon, Feb 3, 2014 at 10:34 AM, <[email protected]> wrote: > >This is my error : > >C:\UMLS-Similarity>umls-similarity.pl --hostname=172.16.5.107:22774 >--username=K >hadim --password=******** --database=UMLS2012AA hand skull >Default Settings: > --precision 4 > --socket /tmp/mysql.sock > > --measure path > >User Settings: > --username Khadim > --password XXXXXXX > --database UMLS2012AA > --hostname 172.16.5.107:22774 > >DBI connect('database=UMLS2012AA;mysql_socket=/tmp/mysql.sock >;host=172.16.5.107:22774','Khadim',...) failed: AccÞs refusÚ pour >l'utilisateur: > 'Khadim'@'@localhost' (mot de passe: NON) at >C:/perl/site/lib/UMLS/Interface/Cu >iFinder.pm line 2425 >Can't call method "err" on an undefined value at >C:/perl/site/lib/UMLS/Interface >/ErrorHandler.pm line 113. -- Ted Pedersen http://www.d.umn.edu/~tpederse
