Finally, it looks like the problem has gone. At the least, durng the past hour 
the touchpad works fine.
What I have done is:
1) removed all unnecessary xorg-input drivers and kept the only following:
     xf86-input-mouse, xserver-xorg-input-evdev, xserver-xorg-input-vmmous, 
xserver-xorg-input-synaptic
2) maybe it was non mandatory, but removed all unnecessary xorg-video drivers 
and kept the only needed by my vcard and abstract:
     xf86-video-v4l, xf86-video-vesa, xf86-video-fbdev, xf86-video-vmware, 
xf86-video-intel
3) removed all nvidia and radeon tools - maybe not mandatory
4) booted in recovery mode and regenerated Xorg.conf.

Now I work with the touchpad more then an hour without any troubles.
Tried to reboot, etc.

So far so good. Hope it helps others.

-- 
[10.04] Touchpad stops working after login
https://bugs.launchpad.net/bugs/549727
You received this bug notification because you are a member of Ubuntu-X,
which is subscribed to xserver-xorg-input-synaptics in ubuntu.

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