In Intrepid, at least, the "System Restart Required" task bar applet
appears while in the process of updating packages (via the Update
Manager applet).

Clicking on the restart applet will prompt the user to reboot.

This is a valid bug report in that respect.  This restart behavior is
dangerous.

The restart applet should be disabled while the update manager (or dpkg
/ apt) is busy.  The same logic could be applied to the normal Logout /
Shutdown / Restart launchers to prevent or confirm the action.

-- 
Shutdown durring update killed ubuntu / update killed mouse
https://bugs.launchpad.net/bugs/214906
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