I tried JohnBender's suggestion, and noticed that a bunch of files were
owned by root.  Is there any reason they should be owned by root?  On a
whim, I found that the following solved all the problems described
above:

sudo chown -R myusername.myusername .mozilla/firefox

-- 
Firefox 3 bookmarks lost after unclean shutdown
https://bugs.launchpad.net/bugs/241609
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