I think I have found the solution (read it somewhere but forgot where).
My laptop seems to have a Hitachi and it doesn't do complete NCQ. Some
of their drives seem to be blacklisted, but I guess mine isn't
(HTS541010G9AT00).

To solve the problem add this line to your /etc/rc.local
sh -c "echo 1 > /sys/block/sda/device/queue_depth"
This will disable NCQ.

Please correct me if I'm wrong.

-- 
ata2 2.6.20-13-generic ata2: port is slow to respond 
https://bugs.launchpad.net/bugs/103277
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