Could you please try the following patch:
=== modified file 'data/apt-check'
--- data/apt-check 2008-06-30 15:43:20 +0000
+++ data/apt-check 2008-07-28 12:27:26 +0000
@@ -109,7 +109,6 @@
upgrades = upgrades + 1
if isSecurityUpgrade(cand_ver):
security_updates += 1
- break
# now check for security updates that are masked by a
# canidate version from another repo (-proposed or -updates)
for ver in pkg.VersionList:
--
update manager reports wrong number of updates in notification area.
https://bugs.launchpad.net/bugs/251494
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