This probably won't help partial detection, but if there are this
"failed to IDENTIFY" messages, does booting with "pci=nomsi" as kernel
parameter help? In that case the problem is rather related to
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/190492.

-- 
Regression in SATA drive detection
https://bugs.launchpad.net/bugs/206901
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