Finally got fed up enough with this that i went into the case and
switched the master and slave drive around, and its working now.

Of Note: the drive that was causing the problem was missing its jumper.
It had three slots one master one slave one cable select, so jumper off
was not a valid option.  I put the jump for that one on to the slave
pins and moved the jumper on the other to be master.

Also I noticed that if i waited a while after starting to do the:

sudo hdparm -w /dev/hda
sudo hdparm -d1 /dev/hda

commands the computer would occasionally lock up when i executed the
first command.

-- 
hdc: status error: status=0x59 { DriveReady SeekComplete DataRequest Error }
https://bugs.launchpad.net/bugs/223780
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