I think I found what caused the problem. It was all my fault:) I don't
use evolution, so I removed it using Synaptic, but I removed some
packages that are needed for the gnome panel. Then I made all those
updates and rebooted. That's why I thought that the problem was in the
updates.

-- 
Upgrade to kernel 2.6.24-19 leads to something wrong with gnome
https://bugs.launchpad.net/bugs/242337
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