I've just tried using Gnuplot with a different desktop environment (XFCE) and 
it works fine. glxgears gives the following output.
[EMAIL PROTECTED]:~/Desktop$ glxgears 
8147 frames in 5.0 seconds = 1629.356 FPS
8103 frames in 5.0 seconds = 1620.455 FPS
8133 frames in 5.0 seconds = 1626.414 FPS
8167 frames in 5.0 seconds = 1633.237 FPS
[EMAIL PROTECTED]:~/Desktop$ 

So it appears that 3D display is not the problem. It appears that
Desktop effects are not in use with xfce.

-- 
Gnuplot crashes
https://bugs.launchpad.net/bugs/239466
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