I have the same problem.  After the 180+ upgrades, all use of gksu from the 
menus stopped working.    
After indicating that an administrative application is being started, nothing 
happens.  A system monitor check shows that another instance of gksu has been 
started but is sleeping with 0.0% processor use.

Running the 'gksu' command from a user terminal pops the dialog, but
nothing happens and the command has to be aborted to get the prompt
back.  It makes no difference if the advance options are selected or
not. Running 'gksu synaptic' from a terminal gives the same non result

My work around has been to 'sudo -s'  in a terminal and run the programs from 
there.
I may elect to try the downgrade of gksu as it is not a problem for me.  If it 
'goes south', I'll just dump and rebuild.   I'm running this particular 
instance (I have 3) of Ubuntu in a a VMWareFusion virtual machine on my iMAC.

Here are some of my environmentals:

512MB ram, dual-processor, 20GB virtual disk as presented via
VMWareFusion Version 1.0 (51348)

Hardy Heron:


xsession-errors:

/etc/gdm/Xsession: Beginning session setup...
Setting IM through im-switch for locale=en_CA.
Start IM through /etc/X11/xinit/xinput.d/all_ALL linked to 
/etc/X11/xinit/xinput.d/default.
SESSION_MANAGER=local/aarc01vu:/tmp/.ICE-unix/5319
** Message: another SSH agent is running at: /tmp/ssh-TKjRcT5319/agent.5319
ALSA lib control.c:909:(snd_ctl_open_noupdate) Invalid CTL front:0
ALSA lib control.c:909:(snd_ctl_open_noupdate) Invalid CTL front:0
Shutdown failed or nothing to shut down.
xrdb:  "*Label.background" on line 220 overrides entry on line 150
xrdb:  "*Text.background" on line 226 overrides entry on line 191
xrdb:  "*Label.foreground" on line 232 overrides entry on line 151
xrdb:  "*Text.foreground" on line 238 overrides entry on line 192
Checking for Xgl: 
** (x-session-manager:5319): WARNING **: Host name lookup failure on localhost.
not present. 
No whitelisted driver found
aborting and using fallback: /usr/bin/metacity 
Window manager warning: Failed to read saved session file 
/home/richardc/.metacity/sessions/default0.ms: Failed to open file 
'/home/richardc/.metacity/sessions/default0.ms': No such file or directory


Tracker version 0.6.6 Copyright (c) 2005-2007 by Jamie McCracken ([EMAIL 
PROTECTED])

This program is free software and comes without any warranty.
It is licensed under version 2 or later of the General Public License which can 
be viewed at http://www.gnu.org/licenses/gpl.txt

Initialising tracker...
Could not set idle IO priority...attempting best effort 7 priority
Initializing nautilus-open-terminal extension
Initializing nautilus-share extension
11
Initializing nautilus-image-converter extension
seahorse nautilus module initialized
starting HAL detection for ac adaptors...found 
/org/freedesktop/Hal/devices/computer_power_supply_ac_adapter_ACAD

** (nautilus:5509): WARNING **: Unable to add monitor: Not supported
Throttle level is 5

(gnome-panel:5507): Gtk-WARNING **: gtk_widget_size_allocate(): attempt to 
allocate widget with width -1 and height 34
evolution-alarm-notify-Message: Setting timeout for 33520 1212624000 1212590480
evolution-alarm-notify-Message:  Wed Jun  4 17:00:00 2008

evolution-alarm-notify-Message:  Wed Jun  4 07:41:20 2008

  PID TTY          TIME CMD
 5472 ?        00:00:00 pulseaudio
seahorse nautilus module shutdown
Shutting down nautilus-image-converter extension
Shutting down nautilus-open-terminal extension
Initializing nautilus-open-terminal extension
Initializing nautilus-share extension
Initializing nautilus-image-converter extension
seahorse nautilus module initialized

** (nautilus:6361): WARNING **: Unable to add monitor: Not supported

** (gnome-control-center:7361): WARNING **: 
error raised: [libslab_get_gconf_value: error getting 
/desktop/gnome/applications/main-menu/lock-down/user_modifiable_apps]


** (gnome-control-center:7361): WARNING **: 
error raised: [load_xbel_store: couldn't load bookmark file [NULL]
]


** (gnome-control-center:7361): WARNING **: key not found 
[/apps/control-center/cc_actions_list]


++++++++++++++++++++++++++++++++++++++++++++++++++++

-- 
gksu does not work properly
https://bugs.launchpad.net/bugs/236525
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