Same here. However, adding --directisa makes this problem go away.

[EMAIL PROTECTED]:~# hwclock --debug --directisa
hwclock from util-linux-ng 2.13.1
Using direct I/O instructions to ISA clock.
Last drift adjustment done at 1211218444 seconds after 1969
Last calibration done at 1211218444 seconds after 1969
Hardware clock is on UTC time
Assuming hardware clock is kept in UTC time.
Waiting for clock tick...
...got clock tick
Time read from Hardware Clock: 2008/05/19 17:35:48
Hw clock time : 2008/05/19 17:35:48 = 1211218548 seconds since 1969
Mon 19 May 2008 10:35:48 PDT  -0.987970 seconds

[EMAIL PROTECTED]:~# lsmod | grep rtc

rtc                    13212  0

[EMAIL PROTECTED]:~# uname -a
Linux alvarezp-desktop 2.6.24-16-386 #1 Thu Apr 10 12:50:06 UTC 2008 i686 
GNU/Linux

[EMAIL PROTECTED]:~# cat /etc/lsb-release
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=8.04
DISTRIB_CODENAME=hardy
DISTRIB_DESCRIPTION="Ubuntu 8.04"

-- 
hwclock does not work
https://bugs.launchpad.net/bugs/198558
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