Just a note to say I can reproduce the problem from scratch with the main 
project I work on.
Steps I follow are :

- download eclispe 3.3 from eclipse.org
- unzip
- run eclipse and create workspace
- install subclipse (subversion plugin)
- create project from svn repository
- add xercesImpl.jar to ant classpath
- clean / rebuild using ant
- press F5 to refresh the project
- ***crash***

from now on, eclipse will crash after a few a few seconds, with the very same 
error log (below some chosen part of it that are always the same, full log is 
already attached) :
....
# Problematic frame:
# V  [libjvm.so+0x20afb0]
....
Current thread (0x00000000006b9000):  JavaThread "CompilerThread1" daemon 
....
Current CompileTask:
C2:350      
org.eclipse.core.internal.dtree.DataTreeNode.forwardDeltaWith([Lorg/eclipse/core/internal/dtree/AbstractDataTreeNode;[Lorg/eclipse/core/internal/dtree/AbstractDataTreeNode;Lorg/eclipse/core/internal/dtree/IComparator;)[Lorg/eclipse/core/internal/dtree/AbstractDataTreeNode;
 (469 bytes)

-- 
JVM utterly unstable with Eclipse 3.3 on x86_64
https://bugs.launchpad.net/bugs/206620
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