This is fixed in Hardy:

hardy (devel): JDEE, Java Development Environment for Emacs(en) [multiverse]
2.3.5.1-4: all

According to the diff.gz:
http://archive.ubuntu.com/ubuntu/pool/multiverse/j/jde/jde_2.3.5.1-4.diff.gz

--- jde-2.3.5.1.orig/debian/jde.doc-base
+++ jde-2.3.5.1/debian/jde.doc-base
@@ -0,0 +1,14 @@
+Document: jde
+Section: Apps/Programming
+Title: JDEE JDE User's Guide
+Author: Paul Kinnucan
+Abstract: This guide explains how to use the JDE to develop Java applications
+ and applets.   The Java Development Environment (JDE) is an Emacs Lisp
+ package that interfaces Emacs to third-party Java application development
+ tools, such as those provided by JavaSoft's Java Development Kit (JDK). The
+ result is an integrated development environment (IDE) comparable in power to
+ many commercial Java IDEs.
+
+Format: HTML
+Index: /usr/share/doc/jde/html/jde-ug/jde-ug.html
+Files: /usr/share/doc/jde/html/jde-ug/*.html

-- 
jde - Error in `/usr/share/doc-base/jde', line 1: the first line does not 
contain valid `Document' field
https://bugs.launchpad.net/bugs/201488
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