Have you tried breaking out your partitions so the /boot is ext2/3 and
separate from /.

Example:
/dev/sda1 /boot <ext3>
/dev/sda2 swap
/dev/sda3 /         <jfs>

-- 
GRUB Installation Fails if non-ext3 Root Partition
https://bugs.launchpad.net/bugs/185878
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