Here is a patch that fixes the problem by ignoring directories (as
suggested by Zygmunt).

** Attachment added: "patch to ignore directories when suggesting binaries"
   
http://launchpadlibrarian.net/12179446/command-not-found-0.2.12ubuntu1_updir-suggestion-bug.patch

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Entering ".." in the shell suggests bogus commands
https://bugs.launchpad.net/bugs/195090
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