I had this same problem. I am running hardy.
Having read it was a superkaramba problem I disabled it and everything worked 
fine.
Later I tried again with superkaramba on, and find out it as superkaramba 
widget, wich monitors system activity was freezing the system. I can run 
superkaramba themes like LiquidWeather but not system activity monitors.
Hope this helps someone.

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Xorg process freezes, uses 100% of CPU. Can be killed by remote terminal.
https://bugs.launchpad.net/bugs/51991
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