I have a similar problem: more than 4000 messages:
depmod: ERROR: ../libkmod/libkmod.c:515 lookup_builtin_file() could not open 
builtin file '/lib/modules/5.6.0-050600rc4-generic/modules.builtin.bin'
installing kernel 5.6.0-050600rc4-generic downloadsd from 
https://kernel.ubuntu.com/~kernel-ppa/mainline/v5.6-rc4/

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https://bugs.launchpad.net/bugs/1864992

Title:
  depmod: ERROR: ../libkmod/libkmod.c:515 lookup_builtin_file() could
  not open builtin file
  '/lib/modules/5.4.0-14-generic/modules.builtin.bin'

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