There are multiple builds and therefore multiple configure steps going on:
cd debian/build-1 && ../../configure --build=s390x-linux-gnu --prefix=/usr
--includedir=\${prefix}/include --mandir=\${prefix}/share/man
--infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var
--disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu
--runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
--disable-silent-rules --disable-gnulib-tests --with-readline --disable-haskell
--with-guestfs-path=/usr/lib/s390x-linux-gnu/guestfs
--with-qemu=qemu-system-s390x --with-supermin-extra-options=--use-installed
--with-java=no --without-java --disable-fuse --disable-ocaml --disable-perl
--disable-erlang --disable-gobject RUBY=ruby2.5 "RAKE=ruby2.5 -S rake"
PYTHON=python2.7 LUA=lua5.3 PHP=php7.3 PHPIZE=phpize7.3
cd debian/build-2 && ../../configure --build=s390x-linux-gnu
--prefix=/usr --includedir=\${prefix}/include
--mandir=\${prefix}/share/man --infodir=\${prefix}/share/info
--sysconfdir=/etc --localstatedir=/var --disable-silent-rules
--libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-
maintainer-mode --disable-dependency-tracking --disable-silent-rules
--disable-gnulib-tests --with-readline --disable-haskell --with-guestfs-
path=/usr/lib/s390x-linux-gnu/guestfs --with-qemu=qemu-system-s390x
--with-supermin-extra-options=--use-installed --with-java=no --without-
java --disable-fuse --disable-ocaml --disable-perl --disable-erlang
--disable-gobject --disable-ruby PYTHON=python3.7 LUA=lua5.2 --disable-
php
cd debian/build-3 && ../../configure --build=s390x-linux-gnu
--prefix=/usr --includedir=\${prefix}/include
--mandir=\${prefix}/share/man --infodir=\${prefix}/share/info
--sysconfdir=/etc --localstatedir=/var --disable-silent-rules
--libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-
maintainer-mode --disable-dependency-tracking --disable-silent-rules
--disable-gnulib-tests --with-readline --disable-haskell --with-guestfs-
path=/usr/lib/s390x-linux-gnu/guestfs --with-qemu=qemu-system-s390x
--with-supermin-extra-options=--use-installed --enable-install-daemon
--with-java=/usr/lib/jvm/default-java JNI_INSTALL_DIR=\${libdir}/jni
--disable-ruby PYTHON=python3.8 LUA=lua5.1 --disable-php
Those are for different Ruby, Python, Lua, and PHP versions but each of them
reported
checking host CPU and C ABI... s390x
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https://bugs.launchpad.net/bugs/1864164
Title:
virt-customize fails with "host cpu (x86_64) and guest arch (s390x)
are not compatible" when running on s390x host
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