Hello,

me wonders why you use spaces in names in your files.

Else, in Ubuntu Xenial (16.04), provided all pdf files in a directory
bear the .pdf extension (which your bug report suggests they don't all
have in your computer), you could do something like this in the console:

find . -name "*.pdf" -exec pdfshuffler {} \;

it works, just you can't just close the program once the job done, you
need to Ctrl+C. I don't know how to end the command line properly to end
the it.

A question for marcelstimberg : how should I change this command line if
the files can be detected as pdf applications instead of being detected
by their name extention?

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https://bugs.launchpad.net/bugs/542755

Title:
  pdfshuffler does not recognize all PDF files in directory

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