Ok, bug #1737112 is related: 
https://bugs.launchpad.net/ubuntu/+source/saods9/+bug/1737112
I installed miniconda3 a few days ago. When I removed it from the path 
(commented export PATH="/usr/local/miniconda3/bin:$PATH" in my ~/.bashrc file), 
I could start ds9 normally (the reason it worked with sudo permissions is 
probably because it didn't have miniconda3 in the path).

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https://bugs.launchpad.net/bugs/1782692

Title:
  ds9 crashes when start from command line

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