I performed bisect on my own and it seems that following commit causes the 
problem:
1920d4a1d4ff27ebfd34a99eca67c3c470c8c524 (x86/speculation/l1tf: Invert all not 
present mappings).

In upstream kernel there is a commit fixing this:
f19f5c49bbc3ffcc9126cc245fc1b24cc29f4a37

The mprotect issue is observed on Ubuntu 4.15.0-36. However, when I
apply f19f5c49bbc3ffcc9126cc245fc1b24cc29f4a37 to Ubuntu 4.15.0-36, the
issue is gone.

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https://bugs.launchpad.net/bugs/1799237

Title:
  mprotect fails on ext4 with dax

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