A new version (2.0.14) was uploaded to Edgy. It'd be nice if you had a chance to test this and report back, if the problem still persists.
** Changed in: gnome-pilot (Ubuntu)
Assignee: (unassigned) => Ubuntu Desktop Bugs
Status: Confirmed => Needs Info
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should automatically detect attached devices and use the apporpriate port
https://launchpad.net/bugs/30015
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