Thanks @Daniel von Vugt for your comment.

Meanwhile I experienced the issue again with the "Workspace Indicator" 
extension not being installed, so this cannot be the culprit in my case. Yet 
while trying to switch workspaces I briefly saw again that silly Psensor popup 
window "Authentication is required to update SMART data from /dev/sda". 
Quitting Psensor removed the blockage right away, to this is the extension to 
blame.
Where/how best to report this apparent Psensor bug?

I had already unticked Psensor's Preferences -> Providers -> 'Enable
support of udisks2' (as suggested as a workaround elsewhere), but this
did not help. Now I've also unticked Preferences -> Providers -> 'Enable
support of hddtemp daemon'. Since meanwhile all HDD related sensors are
disabled in the Psensor preferences I am rather confident that the very
annoying blockage is gone. (If not, I'll uninstall Psensor, since Gnome
3 is unable to properly deal with its strange behavior.)

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https://bugs.launchpad.net/bugs/1181666

Title:
  gnome-shell randomly blocks mouse clicks from working in app windows

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