I have the same issue, on Ubuntu 17.10. I solved it by moving the
download-to directory to home. My "Desktop" is a symlink to
DropBox/Desktop, which is a DropBox, with that may entail.

In summary - my suspicion is that it is DropBox to blame.

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https://bugs.launchpad.net/bugs/700214

Title:
  File went missing as soon as download completed

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