This problem still exists.

The problem is that these modules are listed in the blacklist files
provided with the kernel(/lib/modprobe.d/blacklist_linux-*.conf). Given
that these files aren't located in /etc they apparently are not
configuration files. Also very new kernel package you get a new file
with a different name.

Why are they blacklisted in this way? Why not only in /etc/modprobe.d
/blacklist-watchdog.conf? Is there a way to overwrite this blacklisting
through configuration files?

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https://bugs.launchpad.net/bugs/1535840

Title:
  systemd ignoring /etc/modules due to blacklist

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