Have the same problem at Ubuntu-16.04 fresh install.
Kernel version is 4.4.0-31-generic #50-Ubuntu.
dmesg of the failing xhci port is attached.

Is there anything I can additionally do to help with this?

** Attachment added: "dmesg of the failing xhci port"
   
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1291969/+attachment/4778537/+files/ubuntu-16.04_bug1291969.dmesg.txt

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Title:
  No usb on resume from suspend

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