If I'm not mistaken, you reported the same issue with an older version
of JabRef 1.5 years ago:

https://bugs.launchpad.net/ubuntu/+source/jabref/+bug/1449414

Is the solution that you came up with in the old bug report (open a
database before searching) not working anymore?


Cheers,
gregor

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https://bugs.launchpad.net/bugs/1641602

Title:
  trying to do searches online using websearch and medline option or any
  of the other search engines, no joy, returns 0.

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