I have the same problem. When compiz starts automatically it disrupt the
system tray and also doesn't display the title bars.

To solve it, I manually edit the file
$HOME/.kde/share/config/ksmserverrc and remove the lines below:

[LegacySession: saved at previous logout]
clientMachine1=localhost
command1=/usr/bin/compiz.real,--ignore-desktop-hints,--replace,--indirect-rendering,--sm-client-id,1016e1b21a414d000119193455500000066010019,ccp
count=1

I save the file and I restart the X with <ctrl><alt><backspace>.

I login again and it solves my problem.

Cheers

Piga

-- 
starting compiz in KDE displaces adept from tray
https://bugs.launchpad.net/bugs/131013
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