I am having exactly the same issue on 32bit Gutsy with compiz enabled:
after logging in the bottom panel is missing. Click the desktop anywhere
and it appears.

Also, it looks like this bug was also reported here:
https://bugs.launchpad.net/ubuntu/+bug/151198

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panel missing on startup (gutsy beta compiz)
https://bugs.launchpad.net/bugs/151130
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