Martin,

Actually I have done some more testing and discovered that when index
merging no physical reads were done (they are all cache hits) so ext3
problem is handling a ton of small writes which it does very badly
according to google (it fragments destroying performance and preventing
contiguous writing to the index)

XFS in contrast does these very well with a lot of contiguous writing
which results in almost no loss of speed thanks to its delayed
allocation feature (http://en.wikipedia.org/wiki/Delayed_allocation)
which tracker benefits from.

the good news is that this feature is under consideration for ext4 -
https://ols2006.108.redhat.com/2007/Reprints/sato-Reprint.pdf

so fingers crossed!

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Heavy Disk I/O harms desktop responsiveness
https://bugs.launchpad.net/bugs/131094
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