This issue is fixed with pdns-backend-mysql version 4.0.0~alpha2-3build1
which is available in Ubuntu 16.04.
I just tested it here, and the mariadb-packages didn't cause any
conflicts when attempting to install this package.
** Changed in: pdns (Ubuntu)
Status: New => Fix Released
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https://bugs.launchpad.net/bugs/1526379
Title:
Fix pdns-backend-mysql dependency on mysql exclusively
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