Solved by removing libmapnik. Configured and installed without problem
subsequently.

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https://bugs.launchpad.net/bugs/1575892

Title:
  package libmapnik-dev (not installed) failed to install/upgrade:
  trying to overwrite '/usr/bin/mapnik-config', which is also in package
  libmapnik 2.3.0+dev20140426.git.a4985b3-1~trusty1

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