This patch seems to fix the behaviour, at least as far as a local
Packages/Packages.gz file goes. I have no idea if it impacts other
behaviours (none that I could tell).

>From what I could tell, the bug only appears on a local *compressed*
Packages, and only when IMSHit=true (and it doesn't have to decompress
it). A little bit of sleuthing led me here.

Happy hacking!


** Attachment added: "apt-local-packages.diff"
   http://launchpadlibrarian.net/9716542/apt-local-packages.diff

-- 
[gutsy] apt-get update deletes local Packages.gz file
https://bugs.launchpad.net/bugs/131166
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