Public bug reported:
The provided shell wrappers /usr/bin/Trimmomatic{SE,PE} don't account
for white spaces in file names.
Solution:
-java -classpath "$JARVERSION" org.usadellab.$PKGNAME.$FUNCNAME $@
+java -classpath "$JARVERSION" org.usadellab.$PKGNAME.$FUNCNAME "$@"
** Affects: trimmomatic (Ubuntu)
Importance: Undecided
Status: New
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https://bugs.launchpad.net/bugs/1558602
Title:
Trimmomatic{SE,PE} cannot handle white spaces in file names
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